Index

_

__call__() (mutagenesis_visualization.CreateVariants method) (mutagenesis_visualization.GeneratePrimers method) (mutagenesis_visualization.main.bar_graphs.differential.Differential method) (mutagenesis_visualization.main.bar_graphs.enrichment_bar.EnrichmentBar method) (mutagenesis_visualization.main.bar_graphs.library_representation.LibraryRepresentation method) (mutagenesis_visualization.main.bar_graphs.mean_counts.MeanCounts method) (mutagenesis_visualization.main.bar_graphs.position_bar.PositionBar method) (mutagenesis_visualization.main.bar_graphs.secondary.Secondary method) (mutagenesis_visualization.main.heatmaps.heatmap.Heatmap method) (mutagenesis_visualization.main.heatmaps.heatmap_columns.HeatmapColumns method) (mutagenesis_visualization.main.heatmaps.miniheatmap.Miniheatmap method) (mutagenesis_visualization.main.kernel.histogram.Histogram method) (mutagenesis_visualization.main.kernel.kernel.Kernel method) (mutagenesis_visualization.main.kernel.sequence_differences.SequenceDifferences method) (mutagenesis_visualization.main.other_stats.cumulative.Cumulative method) (mutagenesis_visualization.main.other_stats.rank.Rank method) (mutagenesis_visualization.main.pca_analysis.correlation.Correlation method) (mutagenesis_visualization.main.pca_analysis.individual_correlation.IndividualCorrelation method) (mutagenesis_visualization.main.pca_analysis.pca.PCA method) (mutagenesis_visualization.main.plotly.differential.DifferentialP method) (mutagenesis_visualization.main.plotly.heatmap.HeatmapP method) (mutagenesis_visualization.main.plotly.histogram.HistogramP method) (mutagenesis_visualization.main.plotly.rank.RankP method) (mutagenesis_visualization.main.plotly.scatter.ScatterP method) (mutagenesis_visualization.main.plotly.scatter_3d.Scatter3D method) (mutagenesis_visualization.main.plotly.scatter_3d_pdb.Scatter3DPDB method) (mutagenesis_visualization.main.pymol.pymol.Pymol method) (mutagenesis_visualization.main.scatter.scatter.Scatter method) (mutagenesis_visualization.main.scatter.scatter_replicates.ScatterReplicates method)

C

calculate_enrichment() (in module mutagenesis_visualization) Correlation (class in mutagenesis_visualization.main.pca_analysis.correlation) count_fastq() (in module mutagenesis_visualization)

count_reads() (in module mutagenesis_visualization) Counts (class in mutagenesis_visualization) CreateVariants (class in mutagenesis_visualization) Cumulative (class in mutagenesis_visualization.main.other_stats.cumulative)

D

dataframe (mutagenesis_visualization.Screen attribute)

Differential (class in mutagenesis_visualization.main.bar_graphs.differential) DifferentialP (class in mutagenesis_visualization.main.plotly.differential)

E

EnrichmentBar (class in mutagenesis_visualization.main.bar_graphs.enrichment_bar)

EnrichmentBarP (class in mutagenesis_visualization.main.plotly.enrichment_bar)

G

generate_default_kwargs() (in module mutagenesis_visualization.main.utils.kwargs)

GeneratePrimers (class in mutagenesis_visualization)

H

Heatmap (class in mutagenesis_visualization.main.heatmaps.heatmap) HeatmapColumns (class in mutagenesis_visualization.main.heatmaps.heatmap_columns) HeatmapP (class in mutagenesis_visualization.main.plotly.heatmap)

HeatmapRows (class in mutagenesis_visualization.main.heatmaps.heatmap_rows) Histogram (class in mutagenesis_visualization.main.kernel.histogram) HistogramP (class in mutagenesis_visualization.main.plotly.histogram)

I

IndividualCorrelation (class in mutagenesis_visualization.main.pca_analysis.individual_correlation)

K

Kernel (class in mutagenesis_visualization.main.kernel.kernel)

L

library_representation() (mutagenesis_visualization.Counts method)

LibraryRepresentation (class in mutagenesis_visualization.main.bar_graphs.library_representation) load_demo_datasets() (in module mutagenesis_visualization)

M

mean_counts() (mutagenesis_visualization.Counts method) MeanCounts (class in mutagenesis_visualization.main.bar_graphs.mean_counts)

Miniheatmap (class in mutagenesis_visualization.main.heatmaps.miniheatmap) MultipleKernel (class in mutagenesis_visualization.main.kernel.multiple_kernels)

P

PCA (class in mutagenesis_visualization.main.pca_analysis.pca)

PositionBar (class in mutagenesis_visualization.main.bar_graphs.position_bar) Pymol (class in mutagenesis_visualization.main.pymol.pymol)

R

Rank (class in mutagenesis_visualization.main.other_stats.rank) RankP (class in mutagenesis_visualization.main.plotly.rank)

ROC (class in mutagenesis_visualization.main.other_stats.roc_analysis) run_demo() (in module mutagenesis_visualization)

S

Scatter (class in mutagenesis_visualization.main.scatter.scatter) Scatter3D (class in mutagenesis_visualization.main.plotly.scatter_3d) Scatter3DPDB (class in mutagenesis_visualization.main.plotly.scatter_3d_pdb) ScatterP (class in mutagenesis_visualization.main.plotly.scatter)

ScatterReplicates (class in mutagenesis_visualization.main.scatter.scatter_replicates) Screen (class in mutagenesis_visualization) Secondary (class in mutagenesis_visualization.main.bar_graphs.secondary) SequenceDifferences (class in mutagenesis_visualization.main.kernel.sequence_differences)